rcsbsearch - Query protein structures from python

The rcsbsearch package provides a python interface to the RCSB Search API. Use it to fetch lists of PDB IDs corresponding to advanced query searches.

Contents

• Quickstart
  • Installation
  • Syntax
• Queries
  • Operator syntax
  • Fluent syntax
  • Sessions
• API Documentation

Availability

Get it from pypi:

pip install rcsbsearch

Or, download from github

License

Code is licensed under the BSD 3-clause license. See the LICENSE for details.

Citing

Please cite the rcsbsearch package by URL:

https://rcsbsearch.readthedocs.io

You should also cite the RCSB service this package utilizes:

Yana Rose, Jose M. Duarte, Robert Lowe, Joan Segura, Chunxiao Bi, Charmi Bhikadiya, Li Chen, Alexander S. Rose, Sebastian Bittrich, Stephen K. Burley, John D. Westbrook. RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive, Journal of Molecular Biology, 2020. DOI: 10.1016/j.jmb.2020.11.003